added fill_in to create dynamic values and some tests
[webpac2] / run.pl
1 #!/usr/bin/perl -w
2
3 use strict;
4
5 use Cwd qw/abs_path/;
6 use File::Temp qw/tempdir/;
7 use lib './lib';
8
9 use WebPAC::Common 0.02;
10 use WebPAC::Parser 0.08;
11 use WebPAC::Input 0.16;
12 use WebPAC::Store 0.14;
13 use WebPAC::Normalize 0.22;
14 use WebPAC::Output::TT;
15 use WebPAC::Validate 0.11;
16 use WebPAC::Output::MARC;
17 use WebPAC::Config;
18 use Getopt::Long;
19 use File::Path;
20 use Time::HiRes qw/time/;
21 use File::Slurp;
22 use Data::Dump qw/dump/;
23 use Storable qw/dclone/;
24 use Pod::Usage qw/pod2usage/;
25
26 use Proc::Queue size => 1;
27 use POSIX ":sys_wait_h"; # imports WNOHANG
28
29 =head1 NAME
30
31 run.pl - start WebPAC indexing
32
33 B<this command will probably go away. Don't get used to it!>
34
35 =head1 OPTIONS
36
37 =over 4
38
39 =item --offset 42
40
41 start loading (all) databases at offset 42
42
43 =item --limit 100
44
45 limit loading to 100 records
46
47 =item --clean
48
49 remove database and Hyper Estraier index before indexing
50
51 =item --only=database_name/input_filter
52
53 reindex just single database (legacy name is --one)
54
55 C</input_filter> is optional part which can be C<name>
56 or C<type> from input
57
58 =item --config conf/config.yml
59
60 path to YAML configuration file
61
62 =item --stats
63
64 disable indexing, modify_* in configuration and dump statistics about field
65 and subfield usage for each input
66
67 =item --validate path/to/validation_file
68
69 turn on extra validation of imput records, see L<WebPAC::Validation>
70
71 You can use special variables C<$database> and $C<$input> in this parametar
72 like C<--validate 'conf/validate/$database-$input'> to construct filename
73
74 =item --validate-delimiters path/to/validate_delimiters_file
75
76 this option is used with C<--validate> to turn on extra validation of
77 delimiters. If file is non existant, it will be created on first run.
78
79 =item --marc-generate
80
81 Generate MARC file. This will automatically be on if file contains C<marc*> directives.
82 You can use this option as C<--no-marc-generate> to disable MARC generation.
83
84 =item --marc-lint
85
86 By default turned on if normalisation file has C<marc*> directives. You can disable lint
87 messages with C<--no-marc-lint>.
88
89 =item --marc-dump
90
91 Force dump or input and marc record for debugging.
92
93 =item --parallel 4
94
95 Run databases in parallel (aproximatly same as number of processors in
96 machine if you want to use full load)
97
98 =item --only-links
99
100 Create just links
101
102 =item --merge
103
104 Create merged index of databases which have links
105
106 =back
107
108 =cut
109
110 my $offset;
111 my $limit;
112
113 my $clean = 0;
114 my $config_path;
115 my $debug = 0;
116 my $only_filter;
117 my $stats = 0;
118 my $validate_path;
119 my $validate_delimiters_path;
120 my $marc_generate = 1;
121 my $marc_lint = 1;
122 my $marc_dump = 0;
123 my $parallel = 0;
124 my $only_links = 0;
125 my $merge = 0;
126 my $help;
127
128 my $log = _new WebPAC::Common()->_get_logger();
129
130 GetOptions(
131         "limit=i" => \$limit,
132         "offset=i" => \$offset,
133         "clean" => \$clean,
134         "one=s" => \$only_filter,
135         "only=s" => \$only_filter,
136         "config" => \$config_path,
137         "debug+" => \$debug,
138         "stats" => \$stats,
139         "validate=s" => \$validate_path,
140         "validate-delimiters=s" => \$validate_delimiters_path,
141         "marc-generate!" => \$marc_generate,
142         "marc-lint!" => \$marc_lint,
143         "marc-dump!" => \$marc_dump,
144         "parallel=i" => \$parallel,
145         "only-links!" => \$only_links,
146         "merge" => \$merge,
147         "help" => \$help,
148 );
149
150 $marc_generate = 0 if ( $validate_delimiters_path );
151
152 pod2usage(-verbose => 2) if ($help);
153
154 my $config = new WebPAC::Config( path => $config_path );
155
156 #print "config = ",dump($config) if ($debug);
157
158 die "no databases in config file!\n" unless ($config->databases);
159
160 $log->info( "-" x 79 );
161
162 my $log_file = 'log';
163
164 if (-e $log_file ) {    # && -s $log_file > 5 * 1024 * 1024) {
165         $log->info("moved old log with ", -s $log_file, " bytes to '${log_file}.old'");
166         rename $log_file, "${log_file}.old" || $log->logwarn("can't rename $log_file to ${log_file}.old: $!");
167 }
168
169 my $estcmd_fh;
170 my $estcmd_path = './estcmd-merge.sh';
171 if ($merge) {
172         open($estcmd_fh, '>', $estcmd_path) || $log->logdie("can't open $estcmd_path: $!");
173         print $estcmd_fh 'cd /data/estraier/_node/ || exit 1',$/;
174         print $estcmd_fh 'sudo /etc/init.d/hyperestraier stop',$/;
175         $log->info("created merge batch file $estcmd_path");
176 }
177
178 my $validate;
179 $validate = new WebPAC::Validate(
180         path => $validate_path,
181         delimiters => $config->webpac('delimiters'),
182         delimiters_path => $validate_delimiters_path,
183 ) if ($validate_path || $validate_delimiters_path);
184
185 my $use_indexer = $config->use_indexer;
186 $stats ||= $validate;
187 if ($stats) {
188         $log->debug("disabled indexing for stats collection");
189         $use_indexer = undef;
190 } else {
191         $log->info("using $use_indexer indexing engine...");
192 }
193
194 # parse normalize files and create source files for lookup and normalization
195
196 my $parser = new WebPAC::Parser( config => $config );
197
198 my $total_rows = 0;
199 my $start_t = time();
200
201 my @links;
202
203 if ($parallel) {
204         $log->info("Using $parallel processes for speedup");
205         Proc::Queue::size($parallel);
206 }
207
208 sub create_ds_config {
209         my ($db_config, $database, $input, $mfn) = @_;
210         my $c = dclone( $db_config );
211         $c->{_} = $database || $log->logconfess("need database");
212         $c->{_mfn} = $mfn || $log->logconfess("need mfn");
213         $c->{input} = $input || $log->logconfess("need input");
214         return $c;
215 }
216
217 while (my ($database, $db_config) = each %{ $config->databases }) {
218
219         my ($only_database,$only_input) = split(m#/#, $only_filter) if ($only_filter);
220         next if ($only_database && $database !~ m/$only_database/i);
221
222         if ($parallel) {
223                 my $f=fork;
224                 if(defined ($f) and $f==0) {
225                         $log->info("Created processes $$ for speedup");
226                 } else {
227                         next;
228                 }
229         }
230
231         my $indexer;
232         if ($use_indexer && $parser->have_rules( 'search', $database )) {
233
234                 my $cfg_name = $use_indexer;
235                 $cfg_name =~ s/\-.*$//;
236
237                 my $indexer_config = $config->get( $cfg_name ) || $log->logdie("can't find '$cfg_name' part in confguration");
238                 $indexer_config->{database} = $database;
239                 $indexer_config->{clean} = $clean;
240                 $indexer_config->{label} = $db_config->{name};
241
242                 # force clean if database has links
243                 $indexer_config->{clean} = 1 if ($db_config->{links});
244
245                 if ($use_indexer eq 'hyperestraier') {
246
247                         # open Hyper Estraier database
248                         use WebPAC::Output::Estraier '0.10';
249                         $indexer = new WebPAC::Output::Estraier( %{ $indexer_config } );
250                 
251                 } elsif ($use_indexer eq 'hyperestraier-native') {
252
253                         # open Hyper Estraier database
254                         use WebPAC::Output::EstraierNative;
255                         $indexer = new WebPAC::Output::EstraierNative( %{ $indexer_config } );
256
257                 } elsif ($use_indexer eq 'kinosearch') {
258
259                         # open KinoSearch
260                         use WebPAC::Output::KinoSearch;
261                         $indexer_config->{clean} = 1 unless (-e $indexer_config->{index_path});
262                         $indexer = new WebPAC::Output::KinoSearch( %{ $indexer_config } );
263
264                 } else {
265                         $log->logdie("unknown use_indexer: $use_indexer");
266                 }
267
268                 $log->logide("can't continue without valid indexer") unless ($indexer);
269         }
270
271
272         #
273         # store Hyper Estraier links to other databases
274         #
275         if (ref($db_config->{links}) eq 'ARRAY' && $use_indexer) {
276                 foreach my $link (@{ $db_config->{links} }) {
277                         if ($use_indexer eq 'hyperestraier') {
278                                 if ($merge) {
279                                         print $estcmd_fh 'sudo -u www-data estcmd merge ' . $database . ' ' . $link->{to},$/;
280                                 } else {
281                                         $log->info("saving link $database -> $link->{to} [$link->{credit}]");
282                                         push @links, sub {
283                                                 $log->info("adding link $database -> $link->{to} [$link->{credit}]");
284                                                 $indexer->add_link(
285                                                         from => $database,
286                                                         to => $link->{to},
287                                                         credit => $link->{credit},
288                                                 );
289                                         };
290                                 }
291                         } else {
292                                 $log->warn("NOT IMPLEMENTED WITH $use_indexer: adding link $database -> $link->{to} [$link->{credit}]");
293                         }
294                 }
295         }
296         next if ($only_links);
297
298
299         #
300         # now WebPAC::Store
301         #
302         my $abs_path = abs_path($0);
303         $abs_path =~ s#/[^/]*$#/#;
304
305         my $db_path = $config->webpac('db_path');
306
307         if ($clean) {
308                 $log->info("creating new database '$database' in $db_path");
309                 rmtree( $db_path ) || $log->warn("can't remove $db_path: $!");
310         } else {
311                 $log->info("working on database '$database' in $db_path");
312         }
313
314         my $store = new WebPAC::Store(
315                 path => $db_path,
316                 debug => $debug,
317         );
318
319
320         #
321         # now, iterate through input formats
322         #
323
324         my @inputs;
325         if (ref($db_config->{input}) eq 'ARRAY') {
326                 @inputs = @{ $db_config->{input} };
327         } elsif ($db_config->{input}) {
328                 push @inputs, $db_config->{input};
329         } else {
330                 $log->info("database $database doesn't have inputs defined");
331         }
332
333         foreach my $input (@inputs) {
334
335                 my $input_name = $input->{name} || $log->logdie("input without a name isn't valid: ",dump($input));
336
337                 next if ($only_input && ($input_name !~ m#$only_input#i && $input->{type} !~ m#$only_input#i));
338
339                 my $type = lc($input->{type});
340
341                 die "I know only how to handle input types ", join(",", $config->webpac('inputs') ), " not '$type'!\n" unless (grep(/$type/, $config->webpac('inputs')));
342
343                 my $input_module = $config->webpac('inputs')->{$type};
344
345                 my @lookups = $parser->have_lookup_create($database, $input);
346
347                 $log->info("working on input '$input_name' in $input->{path} [type: $input->{type}] using $input_module",
348                         @lookups ? " creating lookups: ".join(", ", @lookups) : ""
349                 );
350
351                 if ($stats) {
352                         # disable modification of records if --stats is in use
353                         delete($input->{modify_records});
354                         delete($input->{modify_file});
355                 }
356
357                 my $input_db = new WebPAC::Input(
358                         module => $input_module,
359                         encoding => $config->webpac('webpac_encoding'),
360                         limit => $limit || $input->{limit},
361                         offset => $offset,
362                         recode => $input->{recode},
363                         stats => $stats,
364                         modify_records => $input->{modify_records},
365                         modify_file => $input->{modify_file},
366                 );
367                 $log->logdie("can't create input using $input_module") unless ($input);
368
369                 if (defined( $input->{lookup} )) {
370                         $log->warn("$database/$input_name has depriciated lookup definition, removing it...");
371                         delete( $input->{lookup} );
372                 }
373
374                 my $lookup_coderef;
375
376                 if (@lookups) {
377
378                         my $rules = $parser->lookup_create_rules($database, $input) || $log->logdie("no rules found for $database/$input");
379
380                         $lookup_coderef = sub {
381                                 my $rec = shift || die "need rec!";
382                                 my $mfn = $rec->{'000'}->[0] || die "need mfn in 000";
383
384                                 WebPAC::Normalize::data_structure(
385                                         row => $rec,
386                                         rules => $rules,
387                                         config => create_ds_config( $db_config, $database, $input, $mfn ),
388                                 );
389
390                                 #warn "current lookup: ", dump(WebPAC::Normalize::_get_lookup());
391                         };
392
393                         WebPAC::Normalize::_set_lookup( undef );
394
395                         $log->debug("created lookup_coderef using:\n$rules");
396
397                 };
398
399                 my $lookup_jar;
400
401                 my $maxmfn = $input_db->open(
402                         path => $input->{path},
403                         code_page => $input->{encoding},        # database encoding
404                         lookup_coderef => $lookup_coderef,
405                         lookup => $lookup_jar,
406                         %{ $input },
407                         load_row => sub {
408                                 my $a = shift;
409                                 return $store->load_row(
410                                         database => $database,
411                                         input => $input_name,
412                                         id => $a->{id},
413                                 );
414                         },
415                         save_row => sub {
416                                 my $a = shift;
417                                 return $store->save_row(
418                                         database => $database,
419                                         input => $input_name,
420                                         id => $a->{id},
421                                         row => $a->{row},
422                                 );
423                         },
424
425                 );
426
427                 my $lookup_data = WebPAC::Normalize::_get_lookup();
428
429                 if (defined( $lookup_data->{$database}->{$input_name} )) {
430                         $log->debug("created following lookups: ", sub { dump( $lookup_data ) } );
431
432                         foreach my $key (keys %{ $lookup_data->{$database}->{$input_name} }) {
433                                 $store->save_lookup(
434                                         database => $database,
435                                         input => $input_name,
436                                         key => $key,
437                                         data => $lookup_data->{$database}->{$input_name}->{$key},
438                                 );
439                         }
440                 }
441
442                 my $report_fh;
443                 if ($stats || $validate) {
444                         my $path = "out/report/${database}-${input_name}.txt";
445                         open($report_fh, '>', $path) || $log->logdie("can't open $path: $!");
446
447                         print $report_fh "Report for database '$database' input '$input_name' records ",
448                                 $offset || 1, "-", $limit || $input->{limit} || $maxmfn, "\n\n";
449                         $log->info("Generating report file $path");
450                 }
451
452                 my $marc;
453                 if ($marc_generate && $parser->have_rules( 'marc', $database, $input_name )) {
454                         $marc = new WebPAC::Output::MARC(
455                                 path => "out/marc/${database}-${input_name}.marc",
456                                 lint => $marc_lint,
457                                 dump => $marc_dump,
458                         );
459                 }
460
461                 my $rules = $parser->normalize_rules($database,$input_name) || $log->logdie("no normalize rules found for $database/$input_name");
462                 $log->debug("parsed normalize rules:\n$rules");
463
464                 # reset position in database
465                 $input_db->seek(1);
466
467                 # generate name of config key for indexer (strip everything after -)
468                 my $indexer_config = $use_indexer;
469                 $indexer_config =~ s/^(\w+)-?.*$/$1/g if ($indexer_config);
470
471                 my $lookup_hash;
472                 my $depends = $parser->depends($database,$input_name);
473         
474                 if ($depends) {
475                         $log->debug("$database/$input_name depends on: ", dump($depends)) if ($depends);
476                         $log->logdie("parser->depends didn't return HASH") unless (ref($depends) eq 'HASH');
477
478                         foreach my $db (keys %$depends) {
479                                 foreach my $i (keys %{$depends->{$db}}) {
480                                         foreach my $k (keys %{$depends->{$db}->{$i}}) {
481                                                 my $t = time();
482                                                 $log->debug("loading lookup $db/$i");
483                                                 $lookup_hash->{$db}->{$i}->{$k} = $store->load_lookup(
484                                                         database => $db,
485                                                         input => $i,
486                                                         key => $k,
487                                                 );
488                                                 $log->debug(sprintf("lookup $db/$i took %.2fs", time() - $t));
489                                         }
490                                 }
491                         }
492
493                         $log->debug("lookup_hash = ", sub { dump( $lookup_hash ) });
494                 }
495
496
497                 foreach my $pos ( 0 ... $input_db->size ) {
498
499                         my $row = $input_db->fetch || next;
500
501                         $total_rows++;
502
503                         my $mfn = $row->{'000'}->[0];
504
505                         if (! $mfn || $mfn !~ m#^\d+$#) {
506                                 $log->warn("record $pos doesn't have valid MFN but '$mfn', using $pos");
507                                 $mfn = $pos;
508                                 push @{ $row->{'000'} }, $pos;
509                         }
510
511
512                         if ($validate) {
513                                 if ( my $errors = $validate->validate_rec( $row, $input_db->dump_ascii ) ) {
514                                         $log->error( "MFN $mfn validation error:\n",
515                                                 $validate->report_error( $errors )
516                                         );
517                                 }
518                                 next;   # validation doesn't create any output
519                         }
520
521                         my $ds = WebPAC::Normalize::data_structure(
522                                 row => $row,
523                                 rules => $rules,
524                                 lookup => $lookup_hash,
525                                 config => create_ds_config( $db_config, $database, $input, $mfn ),
526                                 marc_encoding => 'utf-8',
527                                 load_row_coderef => sub {
528                                         my ($database,$input,$mfn) = @_;
529                                         return $store->load_row(
530                                                 database => $database,
531                                                 input => $input,
532                                                 id => $mfn,
533                                         );
534                                 },
535                         );
536
537                         $log->debug("ds = ", sub { dump($ds) }) if ($ds);
538
539                         $store->save_ds(
540                                 database => $database,
541                                 input => $input_name,
542                                 id => $mfn,
543                                 ds => $ds,
544                         ) if ($ds && !$stats);
545
546                         $indexer->add(
547                                 id => "${input_name}/${mfn}",
548                                 ds => $ds,
549                                 type => $config->get($indexer_config)->{type},
550                         ) if ($indexer && $ds);
551
552                         if ($marc) {
553                                 my $i = 0;
554
555                                 while (my $fields = WebPAC::Normalize::_get_marc_fields( fetch_next => 1 ) ) {
556                                         $marc->add(
557                                                 id => $mfn . ( $i ? "/$i" : '' ),
558                                                 fields => $fields,
559                                                 leader => WebPAC::Normalize::_get_marc_leader(),
560                                                 row => $row,
561                                         );
562                                         $i++;
563                                 }
564
565                                 $log->info("Created $i instances of MFN $mfn\n") if ($i > 1);
566                         }
567                 }
568
569                 if ($validate) {
570                         my $errors = $validate->report;
571                         if ($errors) {
572                                 $log->info("validation errors:\n$errors\n" );
573                                 print $report_fh "$errors\n" if ($report_fh);
574                         }
575
576                         print $report_fh "\nAll possible subfields/delimiter templates:\n", $validate->delimiters_templates( report => 1, current_input => 1 ), "\n\n";
577
578                         # must be last thing that touches $validate for this input
579                         $validate->reset;
580                 }
581
582                 if ($stats) {
583                         my $s = $input_db->stats;
584                         $log->info("statistics of fields usage:\n$s");
585                         print $report_fh "Statistics of fields usage:\n$s" if ($report_fh);
586                 }
587
588                 # close MARC file
589                 $marc->finish if ($marc);
590
591                 # close report
592                 close($report_fh) if ($report_fh);
593         }
594
595         eval { $indexer->finish } if ($indexer && $indexer->can('finish'));
596
597         my $dt = time() - $start_t;
598         $log->info("$total_rows records ", $indexer ? "indexed " : "",
599                 sprintf("in %.2f sec [%.2f rec/sec]",
600                         $dt, ($total_rows / $dt)
601                 )
602         );
603
604
605         # end forked process
606         if ($parallel) {
607                 $log->info("parallel process $$ finished");
608                 exit(0);
609         }
610
611 }
612
613 if ($parallel) {
614         # wait all children to finish
615         sleep(1) while wait != -1;
616         $log->info("all parallel processes finished");
617 }
618
619 # save new delimiters if needed
620 $validate->save_delimiters_templates if ( $validate );
621
622 #
623 # handle links or merge after indexing
624 #
625
626 if ($merge) {
627         print $estcmd_fh 'sudo /etc/init.d/hyperestraier start',$/;
628         close($estcmd_fh);
629         chmod 0700, $estcmd_path || $log->warn("can't chmod 0700 $estcmd_path: $!");
630         system $estcmd_path;
631 } else {
632         foreach my $link (@links) {
633                 $log->logdie("coderef in link ", Dumper($link), " is ", ref($link), " and not CODE") unless (ref($link) eq 'CODE');
634                 $link->();
635         }
636 }